2. User Guide

• 2.1. Installing
  • 2.1.1. Command line tools
  • 2.1.2. Build directory
  • 2.1.3. GIT behind a firewall
  • 2.1.4. Bitbucket account
  • 2.1.5. Linux environment
• 2.2. Experiments
  • 2.2.1. ISM
  • 2.2.2. MHD shock
  • 2.2.3. Stellar atmospheres
  • 2.2.4. Truelove
• 2.3. Compiling
  • 2.3.1. GUI tools
  • 2.3.2. Option groups
  • 2.3.3. Overriding options
• 2.4. Running
  • 2.4.1. OpenMP
  • 2.4.2. Running under MPI
  • 2.4.3. Hyper-threading
• 2.5. Data access
  • 2.5.1. Data Structure
  • 2.5.2. Simple examples
  • 2.5.3. Auxiliary data
• 2.6. General python support
  • 2.6.1. Documentation
  • 2.6.2. Notebook startup
  • 2.6.3. dispatch module
  • 2.6.4. dispatch.select module
  • 2.6.5. dispatch.graphics module
  • 2.6.6. dispatch.yt module
  • 2.6.7. Expression parsing
  • 2.6.8. Jupyter Notebooks
    • 2.6.8.1. Reading data and 1-D plotting with DISPATCH
    • 2.6.8.2. Data access demo
    • 2.6.8.3. AMR slice animation with YT
• 2.7. Visualization with ParaView
  • 2.7.1. Client–server setup
  • 2.7.2. Using the ParaView plugin
• 2.8. RADMC-3D Export
  • 2.8.1. Export a Snapshot
  • 2.8.2. Options and Cropping
  • 2.8.3. Choosing levelmax
  • 2.8.4. Batch Conversion
  • 2.8.5. Validation
• 2.9. Setting up experiments
  • 2.9.1. Makefile
  • 2.9.2. experiment_mod.f90
  • 2.9.3. scaling_mod.f90
  • 2.9.4. Namelist input files
  • 2.9.5. Python .{py,ipynb} files
• 2.10. Coding standard
  • 2.10.1. Modules
  • 2.10.2. Procedures
  • 2.10.3. Capitalization
  • 2.10.4. Code
  • 2.10.5. Comments
  • 2.10.6. Debug printout